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Microdissection/Microarray Platform

The Microdissection/Microarray Platform was funded as the Breast Cancer Functional Genomics Group in 1999 by Dr. Park.

 

Our activities includes:

Breast cancer tissue and blood banking

- Creating a valuable resource of samples with linked clinical and disease course information - funded through the Réseau de recherche sur le cancer of the FRSQ

Laser capture microdissection

- Allows for isolation of specific cell and tissue types in their original context

- Mouse models and human tissue

Microarray-based gene expression and miRNA profiling

- Creates snapshots of mRNA and miRNA levels in cells that can be analyzed for specific gene expression, regulation and pathway activation

Close collaborations with bioinformatics for quality control and data analysis

- Two-way street – output from bioinformatics is then validated in our group at the mRNA (RT-PCR) and protein (IHC) levels

Close collaborations with clinicians in pathology, surgery and medical oncology allow us to react to current clinical needs

- Sample characterization and correlation with clinical features

- Common project on circulating tumor cells

 

Our Primary focus is to elucidate the role played by the microenvironment in breast cancer progression and outcome

• Tumor does not evolve in a vacuum

• Goal is to elucidate how the tumor per se interacts with its microenvironment – two-way communication that drives evolution of both compartments o Have shown that features of the stroma have an equal effect on disease outcome as tumor features

• Developing clinical tools based on this observation – subclasses as stratifiers, prognostic predictors to identify patients requiring aggressive treatment

• Hope is to identify targets in microenvironment that can be therapeutically addressed

 

Our group also acts as a resource providing specialized equipment, training and expertise that individual labs do not possess

 

For more information, please contact:

Nicholas Bertos, Ph.D.,

Research Associate (Laboratory of Dr. Morag Park)

Director, Breast Cancer Functional Genomics Group

Rosalind and Morris Goodman Cancer Centre, McGill University

Rm. 420/401, Cancer Pavilion, 1160 Pine Ave. W., Montreal QC H3A 1A3

Tel: (514)398-2325 or 4930

E-mail: This e-mail address is being protected from spambots. You need JavaScript enabled to view it

 

Equipments

 
Laser capture microdissection (Arcturus PixCell IIe and XT systems) 
  Nucleic acid extraction and quality control (NanoDrop, Agilent Bioanalyzer*)
  Microarray hybridization and data acquisition (Agilent hybridization ovens and 2 microarray scanners) in an ozone-free environment)
  Data validation (Q-RT-PCR on a LightCycler system, IHC on human breast cancer samples/TMAs)